- Albert Memorial Church see Collyhurst, Albert Memorial Church: Miles Platting
- All Hallows (formerly St Michael and All Angels): Mitton
- All Saints: Marple
- All Saints: Marthall
- All Saints: Newton Heath
- All Saints: Northmoor
- Alma Park United Methodist Free Church, Stockport Road: Levenshulme
- Ashley Lane Congregational: Manchester City Centre
- Ashley Lane Wesleyan: Moston
- Baptist: Long Preston
- Baptist: Nantwich
- Bardsley Gate United Methodist Free Church- See Stalybridge, St Stephen's Methodist: Matley
- Bedford Wesleyan: Leigh
- Benn's Gardens Wesleyan: Liverpool
- Bethesda Independent, Duncan Street East: Liverpool
- Bethesda Independent: Leigh
- Bethlehem Unitarian: Newchurch
- Bold Street Universalists: Liverpool
- Booth Bank Wesleyan: Millington
- Bowlee Primitive Methodist: Middleton
- Brunswick Wesleyan, Moss Street: Liverpool
- Bryar Street Baptist: Lancaster
- Byrom Street Baptist: Liverpool
- Cannon Street Independent: Manchester City Centre
- Catholic Church (Roman Catholic): Leighton Hall
- Central Hall, Oldham Street (formerly Oldham Street Wesleyan): Manchester City Centre
- Central Synagogue, Jewish: Manchester City Centre
- Chain Bar Methodist (ex-United Methodist Free Church): Moston
- Chapel Street Wesleyan Mission: Levenshulme
- Christ Church: Macclesfield
- Church Lane Baptist- See Liverpool, Lime Street Baptist (below): Liverpool
- Church Lane Independent: Nantwich
- Coldhouse Baptist, Shude Hill- See Manchester, St George's Road Baptist (below): Manchester City Centre
- College Chapel United Methodist Free Church, Dickenson Road: Longsight
- Collyhurst Street Primitive Methodist, Rochdale Road: Manchester City Centre
- Cooper Street Calvinistic Methodist (formerly Oak Street): Manchester City Centre
- Cromwell Grove Primitive Methodist: Levenshulme
- Cross Street Presbyterian: Manchester City Centre
- Culcheth Methodist (ex-Methodist New Connexion), Droylsden Road: Newton Heath
- Ebenezer Independent: Macclesfield
- Forest Chapel: Macclesfield Forest
- Gadsby's Chapel Baptist- See Manchester, St George's Road Baptist: Manchester City Centre
- Gartside Street Welsh Independent: Manchester City Centre
- General or Conference Register of the Community, Methodist New Connexion: Manchester City Centre
- German Street Licensed School Room: Manchester City Centre
- Gill Street United Methodist Free Church: Moston
- Goulden Street, New Cross (Roman Catholic): Manchester City Centre
- Great Bridgewater Street Wesleyan: Manchester City Centre
- Great Cross Hall Street Independent: Liverpool
- Great Cross Hall Street Welsh Baptist: Liverpool
- Great George Street Independent: Liverpool
- Great Synagogue, Jewish: Manchester City Centre
- Great Western Street Primitive Methodist: Moss Side
- Greenland Street Independent: Liverpool
- Grosvenor Street Independent, Piccadilly: Manchester City Centre
- Harkirk Catholic Burial Ground (Roman Catholic): Little Crosby
- Hebers United Methodist Free Church, Hollin Lane: Middleton
- High Street Independent: Lancaster
- Holy Trinity: Littleborough
- Holy Trinity: Mossley (Congleton)
- Hospital Street Wesleyan: Nantwich
- Hunter's Croft Independent: Manchester City Centre
- Independent: Malpas
- Independent: New Mills
- Independent: North Meols
- Independent: Northwich
- Ivy Congregational: Longsight
- Jackson's Lane Independent- See Hulme, Jackson's Lane Independent: Manchester City Centre
- Jumbo Primitive Methodist: Middleton
- Kaye Street Presbyterian- See Liverpool, Paradise Street Presbyterian (below): Liverpool
- Kenyon Way Methodist, St George's Road: Little Hulton
- Knolls (also spelt Knowles) Green Independent: Mobberley
- Lathom Chapel (Ormskirk parish): Lathom
- Leagram Hall (Roman Catholic): Leagram (Chipping)
- Leeds Street Wesleyan: Liverpool
- Leigh: Leig
- Leighton Hall (Roman Catholic)- See Yealand, Leighton Hall: Leighton
- Lever Street United Methodist Free Church: Manchester City Centre
- Lightbowne Road Primitive Methodist: Moston
- Lime Street Baptist (formerly Church Lane): Liverpool
- Little Bolton: Little Bolton
- Lloyd Street Presbyterian- See Chorlton-upon-Medlock, Brunswick Street Presbyterian, erected in 1857, which replaced this church.: Manchester City Centre
- Long Street Wesleyan (formerly Wood Street): Middleton
- Longsight Presbyterian, Stockport Road: Longsight
- Longsight Wesleyan, Stockport Road: Longsight
- Lower Broughton: Lower Broughton
- Lymm Primitive Methodist Circuit: Lymm
- Lymm Primitive Methodist, Eagle Brow: Lymm
- Maguire Street Primitive Methodist: Liverpool
- Manchester 2nd Primitive Methodist Circuit: Manchester City Centre
- Manchester 4th Primitive Methodist Circuit: Manchester City Centre
- Manchester 9th Primitive Methodist Circuit: Manchester City Centre
- Market Place Methodist New Connexion: Mossley
- Market Street Primitive Methodist: Marple
- Marple Bridge Independent: Marple Bridge
- Mawdesley Chapel (Croston parish): Mawdesley
- Mellor Chapel (Glossop parish): Mellor (Derbyshire)
- Methodist Chapels: Newton (Hyde)
- Micklehurst Primitive Methodist, Waggon Road: Mossley
- Miles Platting Wesleyan , Hulme Hall Lane (formerly Oldham Road): Miles Platting
- Monsall Wesleyan, Lilley Street: Monsall
- Monthly Meeting, Quaker: Lancaster
- Monthly Meeting, Quaker: Marsden
- Monton Green Presbyterian: Monton
- Morton Street Primitive Methodist: Middleton
- Mosley Street Independent: Manchester City Centre
- Mosley Street Presbyterian- See Chorlton-upon-Medlock, Upper Brook Street Unitarian which replaced this chapel in 1839.: Manchester City Centre
- Moss Lane East Baptist: Moss Side
- Moss Side Wesleyan, Raby Street: Moss Side
- Mossley Wesleyan, Stamford Road: Mossley
- Moston Methodist, Moston Lane (formerly Streetfold United Methodist Free Church): Moston
- Mount Pleasant Wesleyan: Liverpool
- Mount Zion Methodist New Connexion, Nicholas Croft, High Street- See Manchester, Oldham Street Methodist New Connexion, which replaced this chapel in 1807 (below): Manchester City Centre
- New Jerusalem Church, Peter Street: Manchester City Centre
- New Methodist Connexion: Mottram
- New Moston Primitive Methodist, Eastwood Road: Moston
- New Synagogue, Jewish: Manchester City Centre
- Newington Independent, Renshaw Street: Liverpool
- Newton Heath Wesleyan, Oldham Road: Newton Heath
- Oak Street, Green Street Baptist: Manchester City Centre
- Oak Street- See Manchester, Cooper Street Calvinistic Methodist (above): Manchester City Centre
- Octagon Unitarian, Temple Court: Liverpool
- Oldham Road Congregational: Manchester City Centre
- Oldham Road Wesleyan- See Manchester, Wesley, Livesey Street, Oldham Road (below): Manchester City Centre
- Oldham Street Methodist New Connexion: Manchester City Centre
- Oldham Street Wesleyan- See Manchester, Central Hall, Oldham Street (formerly Oldham Street Wesleyan) (above): Manchester City Centre
- Our Lady and St Nicholas- See Liverpool, St Nicholas (below): Liverpool
- Paradise Street Presbyterian (formerly Kaye Street): Liverpool
- Park Street Methodist New Connexion: Macclesfield
- Peter Street Methodist New Connexion- See Hulme, Boston Street (Ebenezer) Methodist New Connexion; the congregation re-located from Manchester, Peter Street to Hulme in 1866.: Manchester City Centre
- Pitt Street Wesleyan: Liverpool
- Presbyterian: Nantwich
- Primitive Methodist, Ward Street- See Oldham, Northmoor Primitive Methodist, Ward Street (below): Northmoor
- Princess Street Primitive Methodist: Lees
- Quaker Preparative Meeting (Manchester District): Manchester City Centre
- Quakers: Mobberley
- Quarterly Meeting, Quaker: Lancashire
- Queen Street Independent: Middlewich
- Queen's Road United Methodist Free Church: Miles Platting
- Renshaw Street Presbyterian: Liverpool
- Rhodes Methodist: Middleton
- Rhodes Primitive Methodist, Chapel Street/Road: Middleton
- Rhodes Wesleyan, Manchester Old Road: Middleton
- Roaches Wesleyan, Manchester Road: Mossley
- Roby Congregational: Longsight
- Rochdale Road Baptist- See Manchester, St George's Road Baptist (below): Manchester City Centre
- Rochdale Road Wesleyan: Milnrow
- Roe Street Independent: Macclesfield
- Roughtown Methodist New Connexion: Mossley
- Roughtown St John the Baptist: Mossley
- Sadler Street United Methodist Free Church: Middleton
- Scotch Presbyterian, Mount Pleasant: Liverpool
- Scotch Presbyterian, Russell Street: Liverpool
- Slade Lane Baptist: Longsight
- Society of Friends, Hardshaw East: Manchester
- Spiritualist Church: Moston
- Spring Mount Primitive Methodist: New Mills
- St Agnes: Leesfield
- St Agnes: North Reddish
- St Aidan: Lower Kersal
- St Andrew: Levenshulme
- St Andrew: Leyland
- St Andrew: Longton
- St Andrew: Maghull
- St Ann: Manchester City Centre
- St Anne: Lancaster
- St Anne: Lydgate
- St Anne: Newton Heath
- St Augustine: Newton Heath
- St Barnabas: Miles Platting
- St Casimir (Roman Catholic): Manchester City Centre
- St Chad (Roman Catholic)- See Cheetham and Cheetham Hill, St Chad: Manchester City Centre
- St Chad - See New Moston, St Chad: Moston
- St Chad: Limeside
- St Chad: New Moston
- St Clement, Lever Street: Manchester City Centre
- St Clement: Longsight
- St Cuthbert, Clayton Bridge: Newton Heath
- St Cuthbert: Lytham
- St Cuthbert: North Meols
- St David's Wesleyan, Parliament Street: Manchester City Centre
- St Edmund (Roman Catholic): Miles Platting
- St George's Presbyterian: Moston
- St George's Road Baptist: Manchester City Centre
- St George, Oldham Road: Manchester City Centre
- St George: Mossley
- St Helen- See Witton, St Helen, as the oldest parish church in Northwich: Northwich
- St James and St Paul: Marton (Prestbury parish)
- St James the Great: Norton (Derbyshire)
- St James, George Street: Manchester City Centre
- St James: Milnrow
- St James: Moss Side
- St James: New Bury
- St John the Baptist, Hey: Lees
- St John the Baptist: Little Hulton
- St John the Evangelist: Miles Platting
- St John, Deansgate: Manchester City Centre
- St John: Lancaster
- St John: Longsight
- St Joseph (Roman Catholic)- See Ancoats, St Joseph: New Cross
- St Joseph (Roman Catholic): Longsight
- St Leonard: Langho
- St Leonard: Middleton
- St Luke: Lower Whitley
- St Luke: Lowick
- St Luke: Miles Platting
- St Margaret Mary (Roman Catholic)- See New Moston, St Margaret Mary (below): Moston
- St Margaret Mary (Roman Catholic): New Moston
- St Mark, Holland Street: Newton Heath
- St Mark- See Newton Heath, St Mark: Miles Platting
- St Martin, German Street: Manchester City Centre
- St Martin: Norris Bank
- St Mary (Roman Catholic)- See St Helens, St Mary, Lowe House: Lowe House
- St Mary (Roman Catholic): Lea
- St Mary (Roman Catholic): Levenshulme
- St Mary (Roman Catholic): Newhouse (near Preston)
- St Mary and St Helen: Neston
- St Mary the Virgin: Leigh
- St Mary's Priory: Lancaster
- St Mary's Road Methodist New Connexion: Moston
- St Mary, Highfield Street (Roman Catholic): Liverpool
- St Mary, Mulberry Street (Roman Catholic): Manchester City Centre
- St Mary, Parsonage: Manchester City Centre
- St Mary: Lymm
- St Mary: Moston
- St Mary: Nantwich
- St Mary: Newchurch
- St Matthew, Campfield: Manchester City Centre
- St Matthew: Little Lever
- St Michael, Angel Meadow- See Angel Meadow, St Michael: Manchester City Centre
- St Michael: Macclesfield
- St Michael: Marbury
- St Michael: Middlewich
- St Michael: Mottram
- St Nicholas and St John: Newchurch
- St Nicholas Street Presbyterian: Lancaster
- St Nicholas: Liverpool
- St Oswald: Lower Peover
- St Oswald: Malpas
- St Paul, New Cross: Manchester City Centre
- St Paul- See Manchester, St Paul, New Cross: New Cross
- St Paul: Lindale
- St Paul: Marton (Lancs)
- St Paul: Norden
- St Peter (Oldham Road): Manchester City Centre
- St Peter (Roman Catholic): Lancaster
- St Peter (Roman Catholic): Lytham
- St Peter's Square, Scotch Presbyterian: Manchester City Centre
- St Peter, Mosley Street: Manchester City Centre
- St Peter: Levenshulme
- St Peter: Little Budworth
- St Peter: Liverpool
- St Peter: Mawdesley
- St Peter: Newbold
- St Peter: Newton
- St Philip, Bradford Road: Manchester City Centre
- St Robert (Roman Catholic)- See Longsight, St Robert: Levenshulme
- St Robert (Roman Catholic): Longsight
- St Simon and St Jude, Granby Row: Manchester City Centre
- St Stephen and All Martyrs: Lever Bridge
- St Stephen's Methodist- See Stalybridge, St Stephen's Methodist: Matley
- St Stephen, Countess of Huntingdon's Connexion: Middleton
- St Stephen- See Macclesfield Forest, Forest Chapel: Macclesfield Forest
- St Thomas, Red Bank- See Red Bank, St Thomas: Manchester City Centre
- St Thomas- See Crumpsall, St Thomas: Lower Crumpsall
- St Thomas: Leesfield
- St Thomas: Melling
- St Thomas: Moorside
- St Thomas: Newhey
- St Thomas: Norbury
- St Wilfrid: Melling
- St Wilfrid: Mobberley
- St Wilfrid: Newton Heath
- St Wilfrid: Northenden
- St William, Angel Meadow (Roman Catholic)- See Angel Meadow, St William: Manchester City Centre
- St. John the Evangelist: Leigh
- Stanhope Street Wesleyan: Liverpool
- Streetfold United Methodist Free Church, Moston Lane- See Moston, Moston Methodist (above): Moston
- Sunderland Street Wesleyan Methodist: Macclesfield
- Swan Street Wesleyan: Manchester City Centre
- The Ascension: Lower Broughton
- The Resurrection: Manchester City Centre
- Toxteth Independent, Toxteth Park: Liverpool
- Toxteth Park Presbyterian: Liverpool
- Unitarian (Ebenezer) , King Edward Street/Back Street: Macclesfield
- United Methodist: Littleborough
- Upper Brook Street Unitarian- See Chorlton-on-Medlock, Upper Brook Street Unitarian: Manchester City Centre
- Wesley, Livesey Street, Oldham Road: Manchester City Centre
- Wesleyan, Bagslate: Norden
- Wesleyan- See Wilmslow, Lende End Wesleyan: Lende End
- Wesleyan: Lamberhead
- Wesleyan: Lancaster
- Wesleyan: Leftwich
- Wesleyan: Leigh
- Wesleyan: Littleborough
- Wesleyan: Long Eaton
- Wesleyan: Lymm
- Wesleyan: Marple
- Wesleyan: Mereclough
- Wharton Presbyterian: Little Hulton
- Wood Street Wesleyan- See Middleton, Long Street (formerly Wood Street) Wesleyan: Middleton
- Wood Street, New Jerusalemite: Middleton
- Zion Congregational, Clare Road (later Zion United Reformed): Levenshulme
- Zion Independent: Lees
- Zion Primitive Methodist, Hall Street: Newton Heath